I was going to try switching to 4:56s but I just don't think the extra shift is worth it. I powershift every gear every time at the track and shifting 5th just didn't seem natural to me. If you are lifting every shift its going to kill your time and probably is causing that hesitation you are feeling. I would also check to see if you are pushing fluid out of your clutch reservoir, overheating clutch can cause the launch hang up you are having. I had the same issue when trying to ride the clutch out with 3:73s. I made the change to 3:90s and it made a very noticable difference although I am probably going back to 3:73s now that the car is going faster. Like the others said a good tune and a cold air kit will wake the car up for sure but I wouldn't waste the money on the boss intake, i saw zero usable gains with it
I just can't bring myself to powershift, if you mean not lifting off the throttle at all. This is my daily driver and I don't want to break stuff, even if I'm giving up a tenth or two in the process. I never thought about the clutch before, but the pedal always seemed fine with the 3.73's so I didn't even consider any clutch issues. I've never found any fluid coming out of th e reservoir, though.
I believe you're right about the Boss intake. The only noticable gains I've ever seen on anyone's dyno graphs are really above 7,000 rpm's, and I'm shifting by 7,200 rpm's anyway. And I won't spin a stock shortblock high enough to take advantage of the Boss intake's high rpm benefit.
I think you're onto something with averaging all your runs. You had picked out all your best 3.73 runs, but you only ran your 4.56's once. So you don't have a mass of runs to pick the best from those as well. For all you know, those runs with the 4.56's could be some of the worst out of all your upcoming runs.
My opinion, keep the gears, work out the tune, and get out there a bunch more times and let it rip.
My best runs with the 3.73's (12.15 and 12.27) were after long cool downs. Every run with the 4.56's was a hot lap as I was really focused on nailing my launch and getting lots of runs in to practice. That had been my biggest problem with the 3.73's that I was hoping the 4.56's cured (which they did). Racing Friday night was only from 4pm to 6:30pm (until dusk), so there just wasn't any time for a long cool down, hence the hotlaps. Best runs with the 4.56's were 12.37 and 12.40.
For comparison, Matt's (MindIfISmoke) '13 GT auto went 12.22 and 12.30 against me when I first arrived, then he promptly parked his car and cooled it down a long time, then went out and ran an 11.93 dropping 3 tenths off his times simply by cooling the car off. Makes me wonder what my car will run cold now, and I won't know until our local tracks are open again in the spring (last Friday was the last raceday of the season). My trap speeds are still a couple MPH less hotlapping the 4.56's vs hotlapping the 3.73's, but I have not run the 4.56's cold to shoot for that ideal cold run yet.
I'm babbling on and on about this, but thinking aloud as I type. You're right, keep the gears, get a proper tune, and run the car cold next time and see what happens. It's gonna be a long off-season waiting for the tracks to opn.